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Phenotypes

The official list of phenotype metrics and their definitions.

Supplier   Phenotype ID Descriptive
Name
Phenotype
Description
Phenotype
Calculation
Units of
Measure
Data
Type
Min
Value
Max
Value
Decimal
Digits
Accepted
Values
University of British Columbia (Vancouver) AfterHeatDroughtDamage_day Numeric 0
University of British Columbia (Vancouver) AfterHeatDrought_damage_score Numeric 0
University of British Columbia (Vancouver) AfterHeatDrought_height_mm Numeric 0
University of British Columbia (Vancouver) BudBreakS02_day Numeric 0
University of British Columbia (Vancouver) BudHeightS02_mm Numeric 0
University of British Columbia (Vancouver) BudLammasS01_day Numeric 0
University of British Columbia (Vancouver) BudLammasS02_day Numeric 0
University of British Columbia (Vancouver) BudSet1S01_day Numeric 0
University of British Columbia (Vancouver) BudSet1S02_day Numeric 0
University of British Columbia (Vancouver) BudSet2S01_day Numeric 0
University of British Columbia (Vancouver) Budset2S02_day Numeric 0
University of British Columbia (Vancouver) BudSwellingS02_day Numeric 0
University of British Columbia (Vancouver) ChlorophyllFluorescence_day Numeric 0
University of British Columbia (Vancouver) ChlorophyllFluorescence_QY1 Numeric 0
University of British Columbia (Vancouver) ChlorophyllFluorescence_QY2 Numeric 0
University of British Columbia (Vancouver) Death_day Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_day Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_T1 Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_T1It Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_T2 Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_T2It Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_T3 Numeric 0
University of British Columbia (Vancouver) FallColdHardS02_T3It Numeric 0
University of British Columbia (Vancouver) FinalRootWeightS02_g Numeric 0
University of British Columbia (Vancouver) FinalShootWeightS02_g Numeric 0
University of British Columbia (Vancouver) FinalStemDiamS02_mm Numeric 0
University of British Columbia (Vancouver) Height1S01_day Numeric 0
University of British Columbia (Vancouver) Height1S01_mm Numeric 0
University of British Columbia (Vancouver) Height1S02_day Numeric 0
University of British Columbia (Vancouver) Height1S02_mm Numeric 0
University of British Columbia (Vancouver) Height2S01_day Numeric 0
University of British Columbia (Vancouver) Height2S01_mm Numeric 0
University of British Columbia (Vancouver) Height2S02_day Numeric 0
University of British Columbia (Vancouver) Height2S02_mm Numeric 0
University of British Columbia (Vancouver) Height3S02_day Numeric 0
University of British Columbia (Vancouver) Height3S02_mm Numeric 0
University of British Columbia (Vancouver) Height4S02_day Numeric 0
University of British Columbia (Vancouver) Height4S02_mm Numeric 0
University of British Columbia (Vancouver) Height5S02_day Numeric 0
University of British Columbia (Vancouver) Height5S02_mm Numeric 0
University of British Columbia (Vancouver) Height6S02_day Numeric 0
University of British Columbia (Vancouver) Height6S02_mm Numeric 0
University of British Columbia (Vancouver) Height7S02_day Numeric 0
University of British Columbia (Vancouver) Height7S02_mm Numeric 0
University of British Columbia (Vancouver) Height8S02_day Numeric 0
University of British Columbia (Vancouver) Height8S02_mm Numeric 0
University of British Columbia (Vancouver) Height9S02_day Numeric 0
University of British Columbia (Vancouver) Height9S02_mm Numeric 0
University of British Columbia (Vancouver) HeightFinalS01_day Numeric 0
University of British Columbia (Vancouver) HeightFinalS01_mm Numeric 0
University of British Columbia (Vancouver) HeightFinalS02_day Numeric 0
University of British Columbia (Vancouver) HeightFinalS02_mm Numeric 0
University of British Columbia (Vancouver) HeightNotesS02 Numeric 0
U S D A Forest Service IFG-Age Tree Age (IFG) Tree age (in years) Years Numeric 1 99 0
U S D A Forest Service IFG-AgeClass Age Class (IFG) Age Classes: OG, old growth; M, mature; P, pole; JUV, juvenile Enumeration N/A N/A N/A OG, M, P, JUV, krumm
U S D A Forest Service IFG-Dia Tree Diameter (IFG) Tree diameter (measured in inches). Inches Numeric 1 99 0
U S D A Forest Service IFG-Health Health Class (IFG) Health: L, live; D, dead; F-D, fading to dead (might have some green foliage); NP, no pitching; P, pitching at bark beetle entrance holes. NB: pitching cannot accurately be determined if mortality is ~ >2 yrs old Enumeration N/A N/A N/A L, D, F-D
U S D A Forest Service IFG-Pitching Pitching Class (IFG) Health: L, live; D, dead; F-D, fading to dead (might have some green foliage); NP, no pitching; P, pitching at bark beetle entrance holes. NB: pitching cannot accurately be determined if mortality is ~ >2 yrs old Enumeration N/A N/A N/A NP, P, NB, P+
U S D A Forest Service IFG-TOT-CONES Total Observed of Cones Total number of cones. Total number of cones. Numeric 0 999 0
University of British Columbia (Vancouver) MidWinterColdHardS02_day Numeric 0
University of British Columbia (Vancouver) MidWinterColdHardS02_T1 Numeric 0
University of British Columbia (Vancouver) MidWinterColdHardS02_T1It Numeric 0
University of British Columbia (Vancouver) MidWinterColdHardS02_T2 Numeric 0
University of British Columbia (Vancouver) MidWinterColdHardS02_T2It Numeric 0
University of British Columbia (Vancouver) MidWinterColdHardS02_T3 Numeric 0
University of British Columbia (Vancouver) MidWinterColdHardS02_T3It Numeric 0
North Carolina State University (Whetten) NCSU1-BV-Cellulose Breeding Value Cellulose Content (NCSU1) breeding value for % holocellulose content of wood BLUP value based on data from breast-height increment cores Numeric 10.0 99.9 1
North Carolina State University (Whetten) NCSU1-BV-Density Breeding Value Density (NCSU1) breeding value for wood oven-dry specific gravity BLUP value based on data from breast-height increment cores Numeric 100 999 0
North Carolina State University (Whetten) NCSU1-BV-Form Breeding Value Stem Form (NCSU1) breeding value for stem form (forking or ramicorn branching), lower is better BLUP value based on data from multiple test sites Numeric 0.00 1.00 2
North Carolina State University (Whetten) NCSU1-BV-Ht Breeding Value Height (NCSU1) breeding value for height BLUP value based on data from multiple test sites Numeric 0.0 99.0 1
North Carolina State University (Whetten) NCSU1-BV-Lignin Breeding Value Lignin Content (NCSU1) breeding value for % lignin content of wood BLUP value based on data from breast-height increment cores Numeric 10.0 99.9 1
North Carolina State University (Whetten) NCSU1-BV-Rust Breeding Value Fusiform Rust Incidence (NCSU1) breeding value for fusiform rust disease incidence, lower is better BLUP value based on data from multiple test sites Numeric 0.00 1.00 2
North Carolina State University (Whetten) NCSU1-BV-Strt Breeding Value Stem Straightness (NCSU1) breeding value for stem straightness BLUP value based on data from multiple test sites Numeric 0.00 1.00 2
North Carolina State University (Whetten) NCSU1-BV-Taper-8 Breeding Value Stem Taper Age 8 (NCSU1) breeding value for stem taper of first log at age 8 ASReml BLUP value based on data from diameter measurements at 0.5 feet from ground level and 12.5 feet from ground level, calculated as (dia 0.5 - dia 12.5)/(dia 0.5). Numeric 0.00 1.00 2
North Carolina State University (Whetten) NCSU1-BV-Vol Breeding Value Stem Volume (NCSU1) breeding value for stem volume BLUP value based on data from multiple test sites Numeric 0.0 99.0 1
North Carolina State University (Whetten) NCSU1-NC-region Breeding/Testing Region for Parents (NCSU1) Breeding/testing region for NC parents Based on origin of first-cycle selections and test sites for later cycles Enumeration N/A N/A N/A P, N, C
North Carolina State University (Whetten) NCSU1-r-BV-Cellulose Accuracy Breeding Value Cellulose Content (NCSU1) accuracy of breeding value for cellulose content from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Density Accuracy Breeding Value Density (NCSU1) accuracy of breeding value for density from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Form Accuracy Breeding Value Stem Form (NCSU1) accuracy of breeding value for stem form from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Ht Accuracy Breeding Value Height (NCSU1) accuracy of breeding value for height from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Lignin Accuracy Breeding Value Lignin Content (NCSU1) accuracy of breeding value for lignin content from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Rust Accuracy Breeding Value Fusiform Rust Resistance (NCSU1) accuracy of breeding value for fusiform rust disease incidence from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Strt Accuracy Breeding Value Stem Straightness (NCSU1) accuracy of breeding value for stem straightness from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Taper Accuracy Breeding Value Stem Taper (NCSU1) accuracy of breeding value for taper from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
North Carolina State University (Whetten) NCSU1-r-BV-Vol Accuracy Breeding Value Stem Volume (NCSU1) accuracy of breeding value for stem volume from BLUP analysis of data from multiple test sites Numeric 0.000 1.000 3
Greenwood Resources PBGP-C5 C5 sugars composite Numeric 0.0 100.0 1
Greenwood Resources PBGP-C6 C6 sugars composite Numeric 0.0 100.0 1
Greenwood Resources PBGP-Lignin lignin monolignols composite Numeric 20.0 30.0 1
Greenwood Resources PBGP-S/G S/G monolignols composite Numeric 1.0 2.0 1
University of British Columbia (Vancouver) SpringColdHardS02_day Numeric 0
University of British Columbia (Vancouver) SpringColdHardS02_T1 Numeric 0
University of British Columbia (Vancouver) SpringColdHardS02_T1It Numeric 0
University of British Columbia (Vancouver) SpringColdHardS02_T2 Numeric 0
University of British Columbia (Vancouver) SpringColdHardS02_T2It Numeric 0
University of British Columbia (Vancouver) SpringColdHardS02_T3 Numeric 0
University of British Columbia (Vancouver) SpringColdHardS02_T3It Numeric 0
Texas A&M University (Byram) TAMU3-AVE-FORM Average Stem Forking Level (TAMU3) Phenotypic forking levels based on a binary score on each tree for the precense or absense of forking in the main bole. Numeric average of values expressed as standard deviations from plantation mean. + equals more forks than average, - less forks Numeric -3.00 3.00 2
Texas A&M University (Byram) TAMU3-AVE-RUST Average Infection Level Fusiform Rust (TAMU3) Phenotypic infection level for fusiform rust incidence Numeric average of values expressed as standard deviations from plantation mean. + equals more rust than average, - less rust Numeric -3.00 3.00 2
Texas A&M University (Byram) TAMU3-AVE-STRT Average Stem Straightness (TAMU3) Phenotypic stem straightness based on subjective 1 to 4 score Numeric average of values expressed as standard deviations from plantation mean. + equals straighter than average, - less straight Numeric -3.00 3.00 2
Texas A&M University (Byram) TAMU3-BV-AVE Average Breeding Value (TAMU3) Breeding Value for planted tree volume as percentage of progeny test average Mean performance over multiple locations adjusted for age/age correlations to predicted performance at age 20. Checklot performance not shown. Numeric 50.00 180.00 2
Texas A&M University (Byram) TAMU3-BV-Ht Breeding Value Height Growth (TAMU3) Breeding Value for height growth as percentage change in SI to progeny test average Mean performance over multiple locations adjusted for age/age correlations to predicted performance at age 20 Numeric 50.00 180.00 2
Texas A&M University (Byram) TAMU3-BV-POLY-Ht Average Percent Change Breeding Value Height Growth (TAMU3) Breeding Value for height growth as percentage change in SI to progeny test average Mean performance over multiple locations adjusted for age/age correlations to predicted performance at age 20 Numeric 50.00 180.00 2
Texas A&M University (Byram) TAMU3-BV-POLY-Vol Average Percent Change Breeding Value Planted Volume (TAMU3) Breeding Value for planted tree volume as percentage of progeny test average Mean performance over multiple locations adjusted for age/age correlations to predicted performance at age 20 Numeric 50.00 180.00 2
Texas A&M University (Byram) TAMU3-BV-POLY-WSPG Wood Specific Gravity Deviation (TAMU3) Wood specific gravity expressed as deviation from unimproved check Numeric -0.0400 0.0400 4
Texas A&M University (Byram) TAMU3-DIFF-WSPG Deviation Expressed Wood Specific Gravity (TAMU3) Wood specific gravity expressed as deviation from unimproved check Numeric -0.0400 0.0400 4
Texas A&M University (Byram) TAMU3-POLY-FORM Stem Forking Levels Main Bole (TAMU3) Phenotypic forking levels based on a binary score on each tree for the precense or absense of forking in the main bole. Numeric average of values expressed as standard deviations from plantation mean. + equals more forks than average, - less forks Numeric -3.00 3.00 2
Texas A&M University (Byram) TAMU3-POLY-RUST Fusiform Rust Infection Level (TAMU3) Phenotypic infection level for fusiform rust incidence Numeric average of values expressed as standard deviations from plantation mean. + equals more rust than average, - less rust Numeric -3.000 3.000 3
Texas A&M University (Byram) TAMU3-POLY-STRT Stem Straightness Class (TAMU3) Phenotypic stem straightness based on subjective 1 to 4 score Numeric average of values expressed as standard deviations from plantation mean. + equals straighter than average, - less straight Numeric -3.00 3.00 2
Texas A&M University (Byram) TAMU3-POLY-STRT-OBS Stem Straightness Total Observations (TAMU3) # Field test on which stem straightness is based Counts Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-BV-Ht Breeding Value Total Observations Height (TAMU3) # Field tests on which site index breeding value is based Counts Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-FORM Stem Forking Resistance Total Observations (TAMU3) # Field test on which stem forking resistance is based Counts Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-OBS Breeding Value Total Observations (TAMU3) # Field tests on which volume breeding value is based May include both open and controll pollinated progeny tests. Values from CP tests are based on GCA estiates. Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-POLY-FORM-OBS Stem Forking Resistance Total Observations (TAMU3) # Field test on which stem forking resistance is based Counts Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-POLY-OBS Breeding Value Volume Total Observations (TAMU3) # Field tests on which volume breeding value is based All advanced generation progeny tests are based on polymix crosses with 14 males chosen to represent average first generation selections. Checklot performance not shown. Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-POLY-RUST Rust Resistance Total Observations (TAMU3) # Field test on which rust resistance is based Includes only tests with 30% or more rust incidence Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-POLY-SI-OBS Breeding Value Site Index Total Observations (TAMU3) # Field tests on which site index breeding value is based Counts Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-RUST Fusiform Rust Resistance Total Observations (TAMU3) # Field test on which rust resistance is based Includes only tests with 30% or more rust incidence Numeric 1 100 0
Texas A&M University (Byram) TAMU3-TOT-STRT Stem Straightness Total Observations (TAMU3) # Field test on which stem straightness is based Counts Numeric 1 100 0
University of California at Davis (Neale Lab) UCD-NEALE-dead-rust Total Observed Dead from Fusiform Rust (UCD) [Sugar Pine 2009 Study] - Number of progeny found dead at the time of last measurement. Count Integer total. Numeric 0 100 0
University of California at Davis (Neale Lab) UCD-NEALE-percent-survivors Survival Rate Percentage (UCD) [Sugar Pine 2009 Study] - Survival rate percentage. Total surviving progeny divided by the total progeny initially planted. Percentage Numeric 0.00000000 100.00000000 8
University of California at Davis (Neale Lab) UCD-NEALE-progeny-count Total Observed Progeny Planted (UCD) [Sugar Pine 2009 Study] - Number of progeny initially planted. Count Integer total. Numeric 0 100 0
University of California at Davis (Neale Lab) UCD-NEALE-rstnc Rust Resistance Genotype (UCD) [Sugar Pine 2009 Study] - Rust resistance genotype. Homozygous dominant (RR), Heterozygous (Rr), and homozygrous recessive (rr). Enumeration N/A N/A N/A RR, Rr, ss
University of Florida UFL-base-diam Base Diameter (UFL) base diameter mm Numeric 4.3 31.1 1
University of Florida UFL-branches-per-ht Total Observed Branches Per Unit Height (UFL) Number of branches per unit height Numeric 0.00 0.30 2
University of Florida UFL-branches-per-node Total Observed Branches Per Node (UFL) Number of branches per node Numeric 0.0 5.0 1
University of Florida UFL-bud-diam Bud Diameter (UFL) bud diameter mm Numeric 0.4 10.9 1
University of Florida UFL-ht Total Observed Height Year 1 (UFL) Total height at end of first year Numeric 15.5 98.0 1
University of Florida UFL-nodes-per-ht Total Observed Nodes Per Unit Height (UFL) Number of nodes per unit height Numeric 0.00 0.11 2
University of Florida UFL-tip-moth-all Total Observed Tip Moth (UFL) tip moth binary (1=yes, 0=no) cummulative (once has always has, 1) Numeric 0 1 0
University of Florida UFL-tot-branches Total Observed Branches (UFL) number of total branches Numeric 0 18 0
University of Florida UFL-tot-nodes Total Observed Nodes (UFL) Number of total nodes Numeric 0 7 0
Middle East Technical University ZK-A.F Scale Scale Average of 20 individuals. Numeric 1.00 4.00 2
Middle East Technical University ZK-APX_1 APX-Ascorbate peroxidases at growth stage 1. APX-Ascorbate peroxidases at growth stage 1. Average of 20 individuals. Average Numeric -5.00 -1.00 2
Middle East Technical University ZK-APX_2 APX-Ascorbate peroxidases at growth stage 2. APX-Ascorbate peroxidases at growth stage 2. Average of 20 individuals. Average Numeric -7.00 -1.00 2
Middle East Technical University ZK-APX_3 APX-Ascorbate peroxidases at growth stage 3. APX-Ascorbate peroxidases at growth stage 3. Average of 20 individuals. Average Numeric -5.00 0.00 2
Middle East Technical University ZK-APX_4 APX-Ascorbate peroxidases at growth stage 4. APX-Ascorbate peroxidases at growth stage 4. Average of 20 individuals. Average Numeric -5.00 2.00 2
Middle East Technical University ZK-B.A Average branch angle Average branch angle Average of 20 individuals. Numeric 10.00 60.00 2
Middle East Technical University ZK-B.N Average number of branches Average number of branches Average of 20 individuals. count Numeric 0.00 50.00 2
Middle East Technical University ZK-DHR_1 DHAR-Dehydroascorbate reductase at growth stage 1. DHAR-Dehydroascorbate reductase at growth stage 1. Average of 20 individuals. Average Numeric 5.00 50.00 2
Middle East Technical University ZK-DHR_2 DHAR-Dehydroascorbate reductase at growth stage 2. DHAR-Dehydroascorbate reductase at growth stage 2. Average of 20 individuals. Average Numeric 5.00 150.00 2
Middle East Technical University ZK-DHR_3 DHAR-Dehydroascorbate reductase at growth stage 3. DHAR-Dehydroascorbate reductase at growth stage 3. Average of 20 individuals. Average Numeric 1.00 40.00 2
Middle East Technical University ZK-DHR_4 DHAR-Dehydroascorbate reductase at growth stage 4. DHAR-Dehydroascorbate reductase at growth stage 4. Average of 20 individuals. Average Numeric 1.00 40.00 2
Middle East Technical University ZK-G.P Average Growth period Average Growth period Average of 20 individuals. Numeric 100.00 200.00 2
Middle East Technical University ZK-GR_1 GR-Glutathione reductase at growth stage 1. GR-Glutathione reductase at growth stage 1. Average of 20 individuals. Average Numeric 0.50 2.00 2
Middle East Technical University ZK-GR_2 GR-Glutathione reductase at growth stage 2. GR-Glutathione reductase at growth stage 2. Average of 20 individuals. Average Numeric 0.50 4.00 2
Middle East Technical University ZK-GR_3 GR-Glutathione reductase at growth stage 3. GR-Glutathione reductase at growth stage 3. Average of 20 individuals. Average Numeric 0.10 3.00 2
Middle East Technical University ZK-GR_4 GR-Glutathione reductase at growth stage 4. GR-Glutathione reductase at growth stage 4. Average of 20 individuals. Average Numeric -1.00 2.00 2
Middle East Technical University ZK-Jul.1.D Average diameter (July) Average diameter (July) Average of 20 individuals. cm Numeric 10.00 80.00 2
Middle East Technical University ZK-Jul.1.H Average height (July) Average height (July) Average of 20 individuals. cm Numeric 100.00 800.00 2
Middle East Technical University ZK-Jun.1.D Average diameter (June) Average diameter (June) Average of 20 individuals. cm Numeric 10.00 80.00 2
Middle East Technical University ZK-Jun.1.H Average height (June) Average height (June) Average of 20 individuals. cm Numeric 100.00 800.00 2
Middle East Technical University ZK-L.A Average leaf area Average leaf area Average of 20 individuals. Numeric 0.00 4.00 2
Middle East Technical University ZK-Sep.1.D Average diameter (September) Average diameter (September) Average of 20 individuals. cm Numeric 10.00 80.00 2
Middle East Technical University ZK-Sep.1.H Average height (September) Average height (September) Average of 20 individuals. cm Numeric 100.00 800.00 2