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Conifer Genome Network PineRefSeq Project SMarTForests Project Conifer Translational Genomics Network TreeGenes Database Dendrome Plone Forestry Careers and Education Resource

Transcriptome Summary

The table below summarizes the transcriptome resources available, organized by species. Click on the species name to learn more about the other genetic and physical resources available.

The transcriptome search page provides a portal to search a variety of parameters and obtain detailed information about the sequence itself and related accession numbers, annotation, etc.

DiversiTree features ESTs from conifers that have been involved in high-throughput resequencing studies.

To download, right click the link and select "Save Link As". Files are in multiheader .fasta format.

Species Name EST cDNA TSA PlantGDB Contigs UniGene Contigs 454 Assembly TG Assembly
Pinus taeda 328662 188 77540 18079 48842 82380
Picea glauca 313353 212 48619 22474
Picea sitchensis 186637 466 9392 31215 19944
Populus trichocarpa 89943 41332 29682 15583
Quercus robur 81671 7 29944 7170
Populus tremula x Populus tremuloides 76160 85 35128 9424
Cryptomeria japonica 61526 359 24299
Eucalyptus camaldulensis 58584 37
Populus trichocarpa x Populus deltoides 53208 2073 23686
Jatropha curcas 46865 607 102085
Eucalyptus grandis 42576 63
Pinus contorta 42087 39 13570
Populus tremula 37313 35 19633
Pinus banksiana 36379 22 13040
Pinus pinaster 34753 50 609 15648
Fagus sylvatica 31309 10 13544
Eucalyptus globulus 28893 62 7106
Vitis vinifera 28869 872 206015
Vitis vinifera 28869 872 206015
Vitis vinifera 28869 872 206015
Picea engelmannii x Picea glauca 28174 21 13880
Populus trichocarpa x Populus nigra 20130 12 9740
Eucalyptus gunnii 19841 8 8171
Pinus sylvestris 19610 455 75513
Pseudotsuga menziesii 18142 218 375961 9857 25041 51548
Populus tremula x Populus alba 15392 87 15946
Populus deltoides 14661 36 71 8186
Picea abies 14345 198 211 8715 19026
Populus euphratica/diversifolia/diversifolia Schrenk ex Fisch. & C.A.Mey./euphratica Olivier 13979 66
Fraxinus excelsior 12083 12
Gnetum gnemon 10724 1 13189
Populus x canadensis 10157 29 4940
Populus alba x Populus tremula var. glandulosa 10005 39 5430
Castanea mollissima 9480 18
Populus simonii x Populus nigra 9349 10
Acacia mangium 9110 51
Eucalyptus pellita 8871
Pinus radiata 8717 57
Eucalyptus urophylla 7440 6
Quercus suber 6698 31
Chamaecyparis obtusa 5897 7
Fagus crenata 5421 9
Populus fremontii x Populus angustifolia 5410 4
Juglans regia 5213 31
Picea mariana 4598 89
Quercus mongolica subsp. crispula 3385
Betula platyphylla 3361 62 121689
Pinus densiflora 3316 11
Pinus thunbergii 3299 5
Abies alba 2806 52 22561
Taiwania cryptomerioides 2624 16
Betula pendula 2549 22
Acacia auriculiformis x Acacia mangium 2459 13 48
Pinus sylvestris/Heterobasidion annosum 1689
Populus tomentiglandulosa 1650
Eucalyptus tereticornis 1131 6
Larix gmelinii 899 9
Chamaecyparis formosensis 805 3
Podocarpus oleifolius 677
Castanea sativa 613
Taxus cuspidata 492 27
Cunninghamia lanceolata 444 30 61670
Pinus tabulaeformis 430 107
Salix viminalis 351 1
Pinus pinea 326 16
Salix caprea 287
Populus alba 162 22
Pinus elliottii 150
Quercus petraea/Quercus robur mixed clone library 148
Pinus massoniana 124 51 69585
Pinus echinata 107
Castanea dentata 91 1
Juglans nigra 78 2
Juglans nigra 78 2
Juglans nigra 78 2
Larix kaempferi 67 58 57359
Eucalyptus bicostata 54
Eucalyptus grandis x Eucalyptus nitens 44
Populus hopeiensis/hopeiensis Hu & H.F.Chow 35 10
Salix matsudana 26 11
Pinus patula 23 2
Salix fragilis 18
Salix elaeagnos 15
Sciadopitys verticillata 11 1 14390
Salix alba 10
Fagus grandifolia 10
Araucaria angustifolia 10 2
Populus simonii/simonii Carriere 4 31
Corylus avellana 3 34 37053
Eucalyptus globulus subsp. globulus 2
Picea engelmannii x Picea sitchensis 13880
Populus tremuloides 5730
Callitris intratropica 78
Quercus petraea 23740
Wollemia nobilis 31290 16974
Populus nigra 32718
Callitris sulcata 24
Taxus wallichiana var. chinensis 40052
Cephalotaxus hainanensis 39356
Araucaria cunninghamii 70475
Picea likiangensis 214
Populus balsamifera 165
Larix sibirica 124
Picea smithiana 99
Taxodium distichum 57
Pinus monticola 55
Taxus x media 49
Picea likiangensis var. likiangensis 48
Picea likiangensis var. balfouriana 47
Betula luminifera 44
Picea likiangensis var. linzhiensis 44
Eucalyptus pilularis 39
Taxus wallichiana 39
Populus simonii 29
Picea purpurea 20
Thuja plicata 19
Picea schrenkiana 18
Eucalyptus cladocalyx/cladocalyx F.Muell. 17
Abies grandis 17
Larix occidentalis 16
Pinus balfouriana 15
Abies sibirica 15
Taxus baccata 13 13597
Tsuga heterophylla 11
Pinus pseudostrobus 10
Pinus yunnanensis 10
Populus euphratica 9 9117
Populus suaveolens/suaveolens Fisch. 9
Salix gilgiana 9
Abies sachalinensis 8 32
Taxus canadensis 8
Cupressus sempervirens 8
Populus szechuanica/szechuanica C.K.Schneid. 6
Callitropsis nootkatensis 6
Pinus halepensis 5
Sequoia sempervirens 5 15299
Thuja occidentalis 5
Picea rubens 5
Picea obovata 5
Acacia koa 4
Pinus resinosa 4
Thujopsis dolabrata 4
Pinus muricata 4
Abies nephrolepis 4
Taxus globosa 4
Juniperus virginiana 4
Juniperus ashei 3
Quercus glauca 3
Picea jezoensis 3
Acacia confusa 3
Pinus teocote 3
Pinus torreyana 3
Pinus brutia 3
Pinus caribaea 3
Pinus coulteri 3
Cathaya argyrophylla 3
Metasequoia glyptostroboides 3
Pinus koraiensis 3
Quercus alba 3
Abies fargesii 3
Salix discolor 3
Cupressus arizonica 3
Millettia pinnata 3
Picea omorika 3
Pinus ponderosa 3
Pinus armandii 3
Juglans sigillata 2
Abies holophylla 2
Abies kawakamii 2
Thuja koraiensis 2
Taxus brevifolia 2
Juglans sigillata 2
Salix bakko 2
Platycladus orientalis 2
Acacia auriculiformis 2
Cephalotaxus harringtonia 2 17955
Eucalyptus saligna 2
Larix x marschlinsii/x eurolepsi 2
Eucalyptus occidentalis 2
Eucalyptus perriniana 2
Eucalyptus robusta 2
Pinus hartwegii 2
Taxus x hunnewelliana 2
Pinus parviflora 2
Eucalyptus nitens 2
Pinus strobus 2
Juniperus rigida 2
Populus fremontii/fremontii S.Watson 1
Pinus nigra 1
Podocarpus macrophyllus 1 15665
Dacrydium pierrei 1
Diselma archeri 1
Cephalotaxus sinensis 1
Cephalotaxus mannii 1
Cephalotaxus fortunei 1
Araucaria heterophylla 1
Agathis dammara 1
Pseudotsuga macrocarpa 1
Pseudotsuga sinensis 1
Torreya californica 1
Larix griffithiana 1
Larix mastersiana 1
Larix potaninii 1
Pseudolarix kaempferi 1
Tsuga dumosa 1
Nothotsuga longibracteata 1
Cedrus deodara 1
Abies balsamea 1
Abies beshanzuensis 1
Abies fabri 1
Abies magnifica 1
Abies nordmanniana 1
Populus grandidentata 1
Populus grandidentata 1
Pinus sabiniana 1
Pseudotaxus chienii 1
Austrotaxus spicata 1
Picea morrisonicola 1
Picea pungens 1
Amentotaxus argotaenia 1
Cupressus funebris 1
Cupressus macrocarpa 1
Cupressus dupreziana 1
Dacrycarpus imbricatus 1
Fitzroya cupressoides 1
Fokienia hodginsii 1
Glyptostrobus pensilis 1
Juniperus chinensis 1
Juniperus formosana 1
Juniperus oxycedrus 1
Juniperus saltillensis 1
Libocedrus bidwillii 1
Libocedrus plumosa 1
Libocedrus yateensis 1
Microbiota decussata 1
Neocallitropsis pancheri 1
Papuacedrus papuana 1
Pilgerodendron uviferum 1
Sequoiadendron giganteum 1
Cupressus bakeri 1
Cupressus atlantica 1
Tetraclinis articulata 1
Thuja standishii 1
Thuja sutchuenensis 1
Widdringtonia nodiflora 1
Chamaecyparis pisifera 1
Chamaecyparis lawsoniana 1
Calocedrus macrolepis 1
Eucalyptus botryoides 1
Calocedrus formosana 1
Callitropsis vietnamensis 1
Callitris rhomboidea 1
Eucalyptus cordata 1
Callitris macleayana 1
Eucalyptus dunnii 1
Callitris columellaris 1
Austrocedrus chilensis 1
Athrotaxis laxifolia 1
Actinostrobus pyramidalis 1
Calocedrus decurrens 1
Betula halophila 1
Pinus attenuata 1
Pinus bungeana 1
Acacia ampliceps 1
Quercus rubra 1
Pinus greggii 1
Tectona grandis 1
Pinus jeffreyi 1
Pinus lambertiana 1 30981 201099
Pinus monophylla 1
Pinus montezumae 1

Icon 03 Updates

PineRefSeq project releases assembly (v2.0) of the Pinus taeda genome Walnut genome project releases assembly (v1.0) of the Juglans regia genome PineRefSeq project releases assembly (v1.0) of the Pseudotsuga menziesii genome PineRefSeq project releases assembly (v1.0) of the Pinus lambertiana genome CartograTree (v3.0), a map interface that works with DiversiTree to bring together genomics, ecological, and trait data is now live! PineRefSeq project releases assembly (v1.01) of the Pinus teada genome SMarTForests Project releases the third assembly of the Picea glauca genome

Icon 01 Events

AFoRGeN2017

Trentino, Italy
June 15-17, 2017
34th Southern Forest Tree Improvement Conference

Melbourne, Florida, USA
June 19-22, 2017

Icon 04 Contact

treegenesdb@gmail.com

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