Dendrome Project

Transcriptome Summary

The table below summarizes the transcriptome resources available, organized by species. Click on the species name to learn more about the other genetic and physical resources available.

The transcriptome search page provides a portal to search a variety of parameters and obtain detailed information about the sequence itself and related accession numbers, annotation, etc.

DiversiTree features ESTs from conifers that have been involved in high-throughput resequencing studies.

If you would like to submit your EST sequences, please contact the TreeGenes team.

To download, right click the link and select "Save Link As". Files are in multiheader .fasta format.

Species Name	EST	cDNA	TSA	PlantGDB Contigs	UniGene Contigs	454 Assembly	TG Assembly
Pinus taeda	328662	184		77540	18079	48842	82380
Picea glauca	313353	211		48619	22474
Picea sitchensis	186637	466	9392	31215	19944
Populus trichocarpa	89943	484		29682	15583
Quercus robur	81671	5		29944	7170
Populus tremula x Populus tremuloides	76160	78		35128	9424
Eucalyptus camaldulensis	58584	33
Cryptomeria japonica	57684	345		24299
Populus trichocarpa x Populus deltoides	53208	2073		23686
Jatropha curcas	46862	263	57711
Eucalyptus grandis	42576	59
Pinus contorta	42087	22		13570
Populus tremula	37313	32		19633
Pinus banksiana	36379	5		13040
Pinus pinaster	34649	30		15648
Fagus sylvatica	31309	10		13544
Eucalyptus globulus	28893	62		7106
Picea engelmannii x Picea glauca	28174	21		13880
Populus trichocarpa x Populus nigra	20130	12		9740
Eucalyptus gunnii	19841	8		8171
Pinus sylvestris	19484	443	75513
Pseudotsuga menziesii	18142	218	37177	9857		25041	51548
Populus tremula x Populus alba	15392	85		15946
Populus deltoides	14661	34	68	8186
Picea abies	14345	170	211	8715		19026
Populus euphratica/diversifolia/diversifolia Schrenk ex Fisch. & C.A.Mey./euphratica Olivier	13979	59
Fraxinus excelsior	12083	4
Gnetum gnemon	10724	1				13189
Populus x canadensis	10157	25		4940
Populus alba x Populus tremula var. glandulosa	10005	32		5430
Castanea mollissima	9480	18
Populus simonii x Populus nigra	9349	4
Acacia mangium	9110	5
Eucalyptus pellita	8871
Pinus radiata	8717	46
Eucalyptus urophylla	7440	2
Quercus suber	6690	22
Chamaecyparis obtusa	5897	7
Fagus crenata	5421	5
Populus fremontii x Populus angustifolia	5410	3
Juglans regia	5213	29
Picea mariana	4598	89
Quercus mongolica subsp. crispula	3385
Betula platyphylla	3361	39	40780
Pinus densiflora	3316	11
Pinus thunbergii	3299	4
Abies alba	2806	52	22561
Taiwania cryptomerioides	2624	11
Betula pendula	2549	17
Acacia auriculiformis x Acacia mangium	2459	13	48
Pinus sylvestris/Heterobasidion annosum	1689
Populus tomentiglandulosa	1650
Eucalyptus tereticornis	1131	5
Larix gmelinii	899	8
Chamaecyparis formosensis	805	3
Podocarpus oleifolius	677
Taxus cuspidata	492	22
Cunninghamia lanceolata	444	24	61670
Salix viminalis	351	1
Pinus pinea	326	2
Salix caprea	287
Populus alba	162	22
Pinus elliottii	150
Quercus petraea/Quercus robur mixed clone library	148
Pinus massoniana	124	9
Pinus echinata	107
Castanea dentata	91	1
Larix kaempferi	67	4	57359
Eucalyptus bicostata	54
Eucalyptus grandis x Eucalyptus nitens	44
Populus hopeiensis/hopeiensis Hu & H.F.Chow	35	10
Salix matsudana	26	3
Pinus patula	23	2
Salix fragilis	18
Salix elaeagnos	15
Sciadopitys verticillata	11	1				14390
Fagus grandifolia	10
Salix alba	10
Araucaria angustifolia	10	2
Populus simonii/simonii Carriere	4	2
Eucalyptus globulus subsp. globulus	2
Picea engelmannii x Picea sitchensis				13880
Callitris intratropica			78
Populus nigra				32718
Populus tremuloides				5730
Quercus petraea				23740
Populus balsamifera		165
Larix sibirica		124
Pinus tabulaeformis		62
Taxodium distichum		57
Pinus monticola		55
Taxus x media		49
Eucalyptus pilularis		39
Picea likiangensis		37
Taxus wallichiana		36
Corylus avellana		30
Picea purpurea		20
Picea schrenkiana		18
Abies grandis		17
Eucalyptus cladocalyx/cladocalyx F.Muell.		17
Larix occidentalis		16
Thuja plicata		16
Abies sibirica		15
Pinus balfouriana		15
Betula luminifera		12
Tsuga heterophylla		11
Pinus yunnanensis		10
Taxus baccata		10				13597
Pinus pseudostrobus		10
Populus suaveolens/suaveolens Fisch.		9
Salix gilgiana		9
Taxus canadensis		8
Cupressus sempervirens		8
Abies sachalinensis		8
Thuja occidentalis		5
Pinus halepensis		5
Picea obovata		5
Sequoia sempervirens		5				15299
Picea rubens		5
Juniperus virginiana		4
Taxus globosa		4
Callitropsis nootkatensis		4
Thujopsis dolabrata		4
Pinus resinosa		4
Pinus muricata		4
Abies nephrolepis		4
Acacia koa		4
Picea omorika		3
Pinus caribaea		3
Abies fargesii		3
Acacia confusa		3
Quercus alba		3
Pinus teocote		3
Pinus brutia		3
Pinus ponderosa		3
Salix discolor		3
Metasequoia glyptostroboides		3
Cathaya argyrophylla		3
Juniperus ashei		3
Cupressus arizonica		3
Pinus coulteri		3
Pinus torreyana		3
Picea jezoensis		3
Abies holophylla		2
Pinus hartwegii		2
Acacia auriculiformis		2
Taxus brevifolia		2
Salix bakko		2
Eucalyptus saligna		2
Populus euphratica		2		9117
Juniperus rigida		2
Eucalyptus robusta		2
Larix x marschlinsii/x eurolepsi		2
Abies kawakamii		2
Platycladus orientalis		2
Taxus x hunnewelliana		2
Eucalyptus occidentalis		2
Eucalyptus perriniana		2
Thuja koraiensis		2
Eucalyptus nitens		2
Pinus strobus		2
Pinus armandii		2
Cupressus funebris		1
Glyptostrobus pensilis		1
Agathis dammara		1
Araucaria heterophylla		1
Thuja standishii		1
Abies magnifica		1
Chamaecyparis lawsoniana		1
Libocedrus plumosa		1
Pseudolarix kaempferi		1
Larix griffithiana		1
Picea pungens		1
Dacrycarpus imbricatus		1
Austrotaxus spicata		1
Tetraclinis articulata		1
Abies beshanzuensis		1
Cupressus macrocarpa		1
Athrotaxis laxifolia		1
Larix mastersiana		1
Microbiota decussata		1
Picea smithiana		1
Libocedrus yateensis		1
Thuja sutchuenensis		1
Cupressus dupreziana		1
Pilgerodendron uviferum		1
Juniperus saltillensis		1
Pseudotaxus chienii		1
Cedrus deodara		1
Abies fabri		1
Sequoiadendron giganteum		1
Picea morrisonicola		1
Actinostrobus pyramidalis		1
Juniperus formosana		1
Pinus greggii		1
Cupressus bakeri		1
Amentotaxus argotaenia		1
Cephalotaxus fortunei		1
Widdringtonia nodiflora		1
Nothotsuga longibracteata		1
Pinus montezumae		1
Tsuga dumosa		1
Juniperus chinensis		1
Diselma archeri		1
Cephalotaxus sinensis		1
Fitzroya cupressoides		1
Acacia ampliceps		1
Callitris macleayana		1
Cupressus atlantica		1
Chamaecyparis pisifera		1
Calocedrus decurrens		1
Pinus lambertiana		1				30981	201099
Callitropsis vietnamensis		1
Calocedrus formosana		1
Quercus rubra		1
Neocallitropsis pancheri		1
Pinus sabiniana		1
Eucalyptus cordata		1
Betula halophila		1
Fokienia hodginsii		1
Pinus jeffreyi		1
Libocedrus bidwillii		1
Pinus attenuata		1
Juniperus oxycedrus		1
Pinus nigra		1
Papuacedrus papuana		1
Pinus monophylla		1
Larix potaninii		1
Populus fremontii/fremontii S.Watson		1
Podocarpus macrophyllus		1				15665
Pseudotsuga sinensis		1
Pinus bungeana		1
Abies balsamea		1
Callitris rhomboidea		1
Dacrydium pierrei		1
Pseudotsuga macrocarpa		1
Eucalyptus botryoides		1
Calocedrus macrolepis		1
Torreya californica		1
Populus szechuanica/szechuanica C.K.Schneid.		1
Callitris columellaris		1
Austrocedrus chilensis		1

Welcome to the TreeGenes Project!

TreeGenes

Links

Transcriptome Summary

Updates

Events

Contact

Connect