Dendrome Project

Transcriptome Summary

The table below summarizes the transcriptome resources available, organized by species. Click on the species name to learn more about the other genetic and physical resources available.

The transcriptome search page provides a portal to search a variety of parameters and obtain detailed information about the sequence itself and related accession numbers, annotation, etc.

DiversiTree features ESTs from conifers that have been involved in high-throughput resequencing studies.

If you would like to submit your EST sequences, please contact the TreeGenes team.

To download, right click the link and select "Save Link As". Files are in multiheader .fasta format.

Species Name	EST	cDNA	TSA	PlantGDB Contigs	UniGene Contigs	454 Assembly	TG Assembly
Pinus taeda	328662	182		77540	18079	48842	82380
Picea glauca	313353	210		48619	22474
Picea sitchensis	186637	463		31215	19944
Populus trichocarpa	89943	419		29682	15583
Quercus robur	81671	3		29944	7170
Populus tremula x Populus tremuloides	76160	75		35128	9424
Cryptomeria japonica	57658	338		24299
Populus trichocarpa x Populus deltoides	45399	2070		23686
Eucalyptus grandis	42575	48
Pinus contorta	42087	5		13570
Populus tremula	37313	32		19633
Pinus banksiana	36379	1		13040
Pinus pinaster	34262	22		15648
Fagus sylvatica	31309	10		13544
Eucalyptus globulus	28893	45		7106
Picea engelmannii x Picea glauca	28174	15		13880
Populus trichocarpa x Populus nigra	20130	12		9740
Eucalyptus gunnii	19841	8		8171
Populus tremula x Populus alba	15315	82		15946
Populus deltoides	14661	28	68	8186
Picea abies	14345	156		8715		19026
Populus euphratica/diversifolia/diversifolia Schrenk ex Fisch. & C.A.Mey./euphratica Olivier	13979	54
Gnetum gnemon	10724					13189
Populus x canadensis	10157	7		4940
Populus alba x Populus tremula var. glandulosa	10005	20		5430
Castanea mollissima	9480	18
Populus simonii x Populus nigra	9349	1
Acacia mangium	9110	5
Eucalyptus pellita	8870
Pinus radiata	8717	42
Eucalyptus urophylla	7431	1
Quercus suber	6690	9
Chamaecyparis obtusa	5897	4
Populus fremontii x Populus angustifolia	5410	3
Juglans regia	5213	24
Pseudotsuga menziesii	3788	209		9857		25041	51548
Quercus mongolica subsp. crispula	3385
Pinus densiflora	3316	10
Taiwania cryptomerioides	2624	10
Acacia auriculiformis x Acacia mangium	2459	13	48
Pinus sylvestris/Heterobasidion annosum	1689
Populus tomentiglandulosa	1650
Eucalyptus tereticornis	1131
Larix gmelinii	899	8
Chamaecyparis formosensis	805	2
Pinus sylvestris	666	98	75513
Cunninghamia lanceolata	407	5
Salix viminalis	351	1
Pinus pinea	326	1
Populus alba	162	20
Taxus cuspidata	161	21
Pinus elliottii	150
Quercus petraea/Quercus robur mixed clone library	148
Pinus echinata	107
Castanea dentata	91	1
Fagus crenata	87	5
Larix kaempferi	67	4
Eucalyptus bicostata	54
Eucalyptus grandis x Eucalyptus nitens	44
Populus hopeiensis/hopeiensis Hu & H.F.Chow	35	4
Salix matsudana	26	3
Pinus patula	23
Salix fragilis	18
Salix elaeagnos	15
Sciadopitys verticillata	11	1				14390
Fagus grandifolia	10
Salix alba	10
Araucaria angustifolia	10	2
Picea mariana	4	89
Populus simonii/simonii Carriere	4	2
Eucalyptus globulus subsp. globulus	2
Quercus petraea				23740
Populus nigra				32718
Picea engelmannii x Picea sitchensis				13880
Populus tremuloides				5730
Populus euphratica				9117
Populus balsamifera		162
Taxodium distichum		57
Abies alba		52
Taxus x media		41
Pinus monticola		38
Picea likiangensis		37
Taxus wallichiana		31
Eucalyptus camaldulensis		28
Eucalyptus pilularis		20
Picea purpurea		20
Picea schrenkiana		18
Abies grandis		17
Thuja plicata		15
Pinus balfouriana		15
Abies sibirica		14
Tsuga heterophylla		11
Populus suaveolens/suaveolens Fisch.		9
Salix gilgiana		9
Taxus canadensis		8
Cupressus sempervirens		8
Abies sachalinensis		8
Pinus massoniana		8
Taxus baccata		6				13597
Picea rubens		5
Pinus halepensis		5
Sequoia sempervirens		5				15299
Pinus tabulaeformis		4
Pinus thunbergii		4
Juniperus virginiana		4
Thuja occidentalis		4
Pinus resinosa		4
Taxus globosa		4
Abies nephrolepis		3
Cathaya argyrophylla		3
Quercus alba		3
Juniperus ashei		3
Larix sibirica		3
Thujopsis dolabrata		3
Picea omorika		3
Pinus caribaea		3
Salix discolor		3
Callitropsis nootkatensis		3
Picea jezoensis		3
Eucalyptus perriniana		2
Cupressus arizonica		2
Taxus x hunnewelliana		2
Acacia auriculiformis		2
Metasequoia glyptostroboides		2
Eucalyptus nitens		2
Juniperus rigida		2
Larix x marschlinsii/x eurolepsi		2
Eucalyptus saligna		2
Salix bakko		2
Pinus strobus		2
Eucalyptus occidentalis		2
Pinus brutia		2
Taxus brevifolia		2
Thuja koraiensis		2
Pseudotaxus chienii		1
Picea morrisonicola		1
Dacrydium pierrei		1
Calocedrus decurrens		1
Pseudolarix kaempferi		1
Pseudotsuga sinensis		1
Thuja sutchuenensis		1
Tsuga dumosa		1
Araucaria heterophylla		1
Chamaecyparis pisifera		1
Dacrycarpus imbricatus		1
Juniperus oxycedrus		1
Libocedrus bidwillii		1
Picea smithiana		1
Abies holophylla		1
Torreya californica		1
Thuja standishii		1
Podocarpus macrophyllus		1				15665
Amentotaxus argotaenia		1
Sequoiadendron giganteum		1
Pinus nigra		1
Platycladus orientalis		1
Cedrus deodara		1
Pinus ponderosa		1
Callitris rhomboidea		1
Pseudotsuga macrocarpa		1
Actinostrobus pyramidalis		1
Agathis dammara		1
Glyptostrobus pensilis		1
Pinus yunnanensis		1
Nothotsuga longibracteata		1
Pinus bungeana		1
Cephalotaxus sinensis		1
Pinus monophylla		1
Fokienia hodginsii		1
Pilgerodendron uviferum		1
Pinus sabiniana		1
Eucalyptus botryoides		1
Diselma archeri		1
Fitzroya cupressoides		1
Acacia ampliceps		1
Widdringtonia nodiflora		1
Callitris macleayana		1
Callitris columellaris		1
Abies magnifica		1
Pinus lambertiana		1				30981	201099
Eucalyptus cordata		1
Austrocedrus chilensis		1
Cupressus funebris		1
Libocedrus yateensis		1
Cephalotaxus fortunei		1

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