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Icon 05 TreeGenes

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Icon 03 Updates

Douglas-fir and Pinus taeda v1.0 Transcriptomes loaded into GBrowse | Literature pipeline recently updated to integrate sequence data | DiversiTree custom TreeGenes interface expanded to deliver phenotype data |

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Transcriptome Summary

The table below summarizes the transcriptome resources available, organized by species. Click on the species name to learn more about the other genetic and physical resources available.

The transcriptome search page provides a portal to search a variety of parameters and obtain detailed information about the sequence itself and related accession numbers, annotation, etc.

DiversiTree features ESTs from conifers that have been involved in high-throughput resequencing studies.

If you would like to submit your EST sequences, please contact the TreeGenes team.

To download, right click the link and select "Save Link As". Files are in multiheader .fasta format.

Species Name EST cDNA TSA PlantGDB Contigs UniGene Contigs 454 Assembly TG Assembly
Pinus taeda 328662 182 77540 18079 48842 82380
Picea glauca 313353 210 48619 22474
Picea sitchensis 186637 463 31215 19944
Populus trichocarpa 89943 419 29682 15583
Quercus robur 81671 3 29944 7170
Populus tremula x Populus tremuloides 76160 75 35128 9424
Cryptomeria japonica 57658 338 24299
Populus trichocarpa x Populus deltoides 45399 2070 23686
Eucalyptus grandis 42575 48
Pinus contorta 42087 5 13570
Populus tremula 37313 32 19633
Pinus banksiana 36379 1 13040
Pinus pinaster 34262 22 15648
Fagus sylvatica 31309 10 13544
Eucalyptus globulus 28893 45 7106
Picea engelmannii x Picea glauca 28174 15 13880
Populus trichocarpa x Populus nigra 20130 12 9740
Eucalyptus gunnii 19841 8 8171
Populus tremula x Populus alba 15315 82 15946
Populus deltoides 14661 28 68 8186
Picea abies 14345 156 8715 19026
Populus euphratica/diversifolia/diversifolia Schrenk ex Fisch. & C.A.Mey./euphratica Olivier 13979 54
Gnetum gnemon 10724 13189
Populus x canadensis 10157 7 4940
Populus alba x Populus tremula var. glandulosa 10005 20 5430
Castanea mollissima 9480 18
Populus simonii x Populus nigra 9349 1
Acacia mangium 9110 5
Eucalyptus pellita 8870
Pinus radiata 8717 42
Eucalyptus urophylla 7431 1
Quercus suber 6690 9
Chamaecyparis obtusa 5897 4
Populus fremontii x Populus angustifolia 5410 3
Juglans regia 5213 24
Pseudotsuga menziesii 3788 209 9857 25041 51548
Quercus mongolica subsp. crispula 3385
Pinus densiflora 3316 10
Taiwania cryptomerioides 2624 10
Acacia auriculiformis x Acacia mangium 2459 13 48
Pinus sylvestris/Heterobasidion annosum 1689
Populus tomentiglandulosa 1650
Eucalyptus tereticornis 1131
Larix gmelinii 899 8
Chamaecyparis formosensis 805 2
Pinus sylvestris 666 98 75513
Cunninghamia lanceolata 407 5
Salix viminalis 351 1
Pinus pinea 326 1
Populus alba 162 20
Taxus cuspidata 161 21
Pinus elliottii 150
Quercus petraea/Quercus robur mixed clone library 148
Pinus echinata 107
Castanea dentata 91 1
Fagus crenata 87 5
Larix kaempferi 67 4
Eucalyptus bicostata 54
Eucalyptus grandis x Eucalyptus nitens 44
Populus hopeiensis/hopeiensis Hu & H.F.Chow 35 4
Salix matsudana 26 3
Pinus patula 23
Salix fragilis 18
Salix elaeagnos 15
Sciadopitys verticillata 11 1 14390
Fagus grandifolia 10
Salix alba 10
Araucaria angustifolia 10 2
Picea mariana 4 89
Populus simonii/simonii Carriere 4 2
Eucalyptus globulus subsp. globulus 2
Quercus petraea 23740
Populus nigra 32718
Picea engelmannii x Picea sitchensis 13880
Populus tremuloides 5730
Populus euphratica 9117
Populus balsamifera 162
Taxodium distichum 57
Abies alba 52
Taxus x media 41
Pinus monticola 38
Picea likiangensis 37
Taxus wallichiana 31
Eucalyptus camaldulensis 28
Eucalyptus pilularis 20
Picea purpurea 20
Picea schrenkiana 18
Abies grandis 17
Thuja plicata 15
Pinus balfouriana 15
Abies sibirica 14
Tsuga heterophylla 11
Populus suaveolens/suaveolens Fisch. 9
Salix gilgiana 9
Taxus canadensis 8
Cupressus sempervirens 8
Abies sachalinensis 8
Pinus massoniana 8
Taxus baccata 6 13597
Picea rubens 5
Pinus halepensis 5
Sequoia sempervirens 5 15299
Pinus tabulaeformis 4
Pinus thunbergii 4
Juniperus virginiana 4
Thuja occidentalis 4
Pinus resinosa 4
Taxus globosa 4
Abies nephrolepis 3
Cathaya argyrophylla 3
Quercus alba 3
Juniperus ashei 3
Larix sibirica 3
Thujopsis dolabrata 3
Picea omorika 3
Pinus caribaea 3
Salix discolor 3
Callitropsis nootkatensis 3
Picea jezoensis 3
Eucalyptus perriniana 2
Cupressus arizonica 2
Taxus x hunnewelliana 2
Acacia auriculiformis 2
Metasequoia glyptostroboides 2
Eucalyptus nitens 2
Juniperus rigida 2
Larix x marschlinsii/x eurolepsi 2
Eucalyptus saligna 2
Salix bakko 2
Pinus strobus 2
Eucalyptus occidentalis 2
Pinus brutia 2
Taxus brevifolia 2
Thuja koraiensis 2
Pseudotaxus chienii 1
Picea morrisonicola 1
Dacrydium pierrei 1
Calocedrus decurrens 1
Pseudolarix kaempferi 1
Pseudotsuga sinensis 1
Thuja sutchuenensis 1
Tsuga dumosa 1
Araucaria heterophylla 1
Chamaecyparis pisifera 1
Dacrycarpus imbricatus 1
Juniperus oxycedrus 1
Libocedrus bidwillii 1
Picea smithiana 1
Abies holophylla 1
Torreya californica 1
Thuja standishii 1
Podocarpus macrophyllus 1 15665
Amentotaxus argotaenia 1
Sequoiadendron giganteum 1
Pinus nigra 1
Platycladus orientalis 1
Cedrus deodara 1
Pinus ponderosa 1
Callitris rhomboidea 1
Pseudotsuga macrocarpa 1
Actinostrobus pyramidalis 1
Agathis dammara 1
Glyptostrobus pensilis 1
Pinus yunnanensis 1
Nothotsuga longibracteata 1
Pinus bungeana 1
Cephalotaxus sinensis 1
Pinus monophylla 1
Fokienia hodginsii 1
Pilgerodendron uviferum 1
Pinus sabiniana 1
Eucalyptus botryoides 1
Diselma archeri 1
Fitzroya cupressoides 1
Acacia ampliceps 1
Widdringtonia nodiflora 1
Callitris macleayana 1
Callitris columellaris 1
Abies magnifica 1
Pinus lambertiana 1 30981 201099
Eucalyptus cordata 1
Austrocedrus chilensis 1
Cupressus funebris 1
Libocedrus yateensis 1
Cephalotaxus fortunei 1