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Welcome to the TreeGenes Project!

 TreeGenes

Summary by Genus

Colleagues Organizations

Forest Trees

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Search Transcriptome Transcriptome Summary

Search Proteins Protein Summary

Search Expression Expr. Studies Summary

Genotype, Phenotype & Sequence CartograTree

Comparative Mapping Database

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GBrowse Portal

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 Links

Conifer Genome Network PineRefSeq Project SMarTForests Project Conifer Translational Genomics Network TreeGenes Database Dendrome Plone Forestry Careers and Education Resource

GBrowse

The Generic Genome Browser (GBrowse v. 2.40) is a combination of database and interactive website for manipulating and displaying annotations on genomes.

GENOME

Betula nana	Downloads More Info Genome v1.0 Genome v1.0 - Approximately 564 Mb arranged in 551,923 scaffolds
Eucalyptus camaldulensis	Downloads More Info Genome v1.0 Genome v1.0 - Approximately 655 Mb arranged in 81,246 scaffolds
Eucalyptus grandis	GBrowse More Info Genome v1.1    Assembly v1.1 [JGI-Phytozome] - Approximately 691 Mb arranged in 4952 scaffolds
Fraxinus excelsior	Downloads More Info Genome v0.1 Genome v0.1 - Approximately 417,760 contigs representing 618 Mbp
Manihot esculenta	GBrowse Genome v1.0
Picea glauca	More Info Assembly v1.0 [SMarTForests] - Approximately 15.2 Gb
Pinus taeda	GBrowse More Info Downloads UCD BACs    Clemson BACs    UCD Fosmids    UCD BACs - 10 Sequences Clemson BACs - 93 Sequences Pinus taeda draft genome v.0.8 contigs Pinus taeda draft genome v.0.8 scaffolds Pinus taeda preliminary draft genome v.0.6 contigs Pinus taeda preliminary draft genome v.0.6 scaffolds UCD Fosmids - 90,973 Fosmids
Populus grandidentata	Downloads Genome v0.1 - Approximately 124,292 contigs
Populus tremula	Downloads Genome v0.1 - Approximately 210,683 contigs
Populus tremula x Populus tremuloides	Downloads Genome v0.1 - Approximately 290,142 contigs
Populus tremuloides	Downloads Genome v0.1 - Approximately 184,651 contigs
Populus trichocarpa	GBrowse More Info Genome v2.2    Genome v3.0    Assembly v2.2 [JGI-Phytozome] - Approximately 403Mb arranged in 2518 scaffolds
Vitis vinifera	GBrowse Genome v1.0

TRANSCRIPTOME

Populus tremula	Downloads Transcriptome v0.2 - 107,753 contigs annotated
Pseudotsuga menziesii	GBrowse More Info Downloads Transcriptome v1.0    Transcriptome v2.0    Transcriptome and Annotation Reports Transcriptome v1.0 - 51,548 contigs annotated
Pinus lambertiana	GBrowse Downloads Transcriptome v1.0    Transcriptome v1.0 - 201,099 contigs annotated
Pinus taeda	Downloads Transcriptome v1.0 - 82,380 contigs annotated

 Updates

PineRefSeq project releases assembly (v0.9) of the Pinus teada genome CartograTree (v2.0.0) , a map interface that works with DiversiTree to bring together genomics, ecological, and trait data is now live! SMarTForests Project releases the first assembly (v1.0) of the Picea glauca genome

 Events

IUFRO Tree Biotechnology 2013 - Forest Biotechnology: Meeting the Needs of a Changing World

Asheville, NC, USA
May 26 - June 1, 2013 Southern Forest Tree Improvement Conference

Clemson University, Clemson, SC
June 10-13, 2013 The 2013 Conifer Genome Sequencing Summit

Bjorkliden, Lapland, Sweden
June 14-17, 2013

 Contact

tg-help@ucdavis.edu

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