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Welcome to the Dendrome Project!

Icon 05 TreeGenes

Sequence Resources

Summary by Genus

Colleague Directory

Colleagues Organizations

Species Database

Forest Trees

Literature Database

Search Literature

Transcriptome Database

Search Transcriptome Transcriptome Summary

Protein Database

Search Proteins Protein Summary

Expression Studies

Search Expression Expr. Studies Summary

DiversiTree

Genotype, Phenotype and Sequence CartograTree

Comparative Mapping Database

Published Maps Maps Recently Submitted Search Cmap

Genome Transcriptome Browser

GBrowse Portal

Submissions

Submit to TreeGenes

Icon 03 Updates

PineRefSeq project releases assembly (v0.8) of the Pinus teada genome | CartograTree (v2.0.0), a map interface that works with DiversiTree to bring together genomics, ecological, and trait data is now live! | SMarTForests Project releases the first assembly (v1.0) of the Picea glauca genome |

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EST Summary

The table below summarizes the public EST resources in each forest tree species listed. Click on the species name to learn more the other genomics resources available as well as relevant photos, range maps, and publications.

The EST search page provides a form to locate sequences themselves and supplemental data from the database.

The resequencing database features ESTs from conifers that have been involved in high-throughput resequencing studies.

If you would like to submit your EST sequences to TreeGenes, please proceed to our processing pipeline.

To download, right click the link and select "Save Link As". Files are in multiheader .fasta format.

Species Name EST Count PlantGDB Contigs UniGene Contigs
Pinus taeda3286287754018079
Picea glauca3131104861922474
Picea sitchensis1866373121519944
Populus trichocarpa899432968215583
Populus tremula x Populus tremuloides76160351289424
Quercus robur81646299447170
Populus nigra5136132718
Quercus petraea5817323740
Cryptomeria japonica5664524299
Populus trichocarpa x Populus deltoides5320823686
Populus tremula3731319633
Pinus contorta4048313570
Pinus pinaster3404415648
Pinus banksiana3637913040
Fagus sylvatica3130913544
Picea engelmannii x Picea glauca2817413880
Populus tremula x Populus alba1539215946
Populus trichocarpa x Populus nigra201309740
Eucalyptus gunnii198418171
143549857
Populus euphratica139799117
Picea abies143458715
Populus deltoides146618186
Populus tremuloides128135730
Eucalyptus globulus113397106
Populus alba x Populus tremula var. glandulosa100055430
Populus x canadensis101574940
Picea engelmannii x Picea sitchensis13880
Castanea mollissima9480
Populus simonii x Populus nigra9168
Acacia mangium9110
Pinus radiata8717
Quercus suber6690
Chamaecyparis obtusa5897
Populus fremontii x Populus angustifolia5410
Pseudotsuga menziesii3788
Quercus mongolica var. grosseserrata3385
Pinus densiflora3316
Eucalyptus globulus subsp. bicostata2685
Taiwania cryptomerioides2624
Acacia auriculiformis2459
Eucalyptus grandis1939
Pinus sylvestris/Heterobasidion annosum1689
Populus tomentiglandulosa1650
Eucalyptus tereticornis1131
Pinus rigida1002
Chamaecyparis formosensis805
Pinus sylvestris666
Cunninghamia lanceolata407
Salix viminalis351
Pinus pinea289
Populus tomentosa209
Populus alba162
Taxus cuspidata161
Pinus elliottii150
Castanea sativa mill101
Castanea dentata91
Fagus crenata87
Larix kaempferi57
Eucalyptus grandis x Eucalyptus nitens44
Salix matsudana26
Pinus patula23
Salix fragilis18
Salix elaeagnos15
Fagus grandifolia subsp. grandifolia10
Araucaria angustifolia10
Salix alba10
Picea mariana4
Populus simonii4
Eucalyptus globulus subsp. globulus2