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Welcome to the Dendrome Project!

Icon 05 Resources

Scripts BLAST FASTA Tools Databases TreeGenes Plant Ontology

Icon 03 Updates

New EST analysis and submission pipeline available for use! | Plant Gene Ontology database ported into mysql | New Forestry Careers and Education Outreach Website is Live! |

Icon 02 Links

Conifer Genome Network | Conifer Genome Project | TreeGenes Database | Dendrome Plone | Neale Lab | Forestry Careers and Education Resource |

Databases

Protein Database

Database Description Help
nr NCBI Nucleotide Retrieval [Help]
SwissProt annotated protein sequence [Help]
Arabidopsis Arabidopsis Proteins [Help]
TAIR6 Arabidopsis Proteins [Help]
RefSeq Protein Comprehensive Protein Products [Help]
Uniprot/SwissProt Plants annotated protein sequence [Help]

 

Nucleotide Database

Database Description Help
RefSeq Genomic Non-redundant genomic DNA [Help]
Arabidopsis BAC Genomic Arabidopsis BAC Libraries [Help]
Arabidopsis BAC EST Genomic Arabidopsis BAC Libraries [Help]
TAIR CDS Arabidopsis CDs [Help]
TAIR Sequences Arabidopsis Sequences [Help]
EST others sequence data and other information on single-pass cDNA sequences [Help]

 

Tree Database

Database Description Help
Pseudotsuga Menzesii Douglas Fir cDNA/EST Database [Help]
Pinus Taeda Loblolly Pine cDNA/EST Database [Help]
Pinus Glauca White Spruce cDNA/EST Database [Help]
Pinus Sitchensis Sitka Spruce cDNA/EST Database [Help]
Populus Balsamifera Balsam Poplar cDNA/EST Database [Help]
Populus Temula x Populus Temuloides Quaking Aspen cDNA/EST Database [Help]

 

Custom Databases

Database Description Help
CholorplastDB Cholorplast Protein from Plant species [Help]
CholorplastDB_nt Cholorplast Nucleotide from Plant species [Help]
Mitochondria Mitochondria Protein from maize and arabidopsis [Help]
Mitochondria_nt Mitochondria Nucleotide from Plants [Help]

 

Gene Ontology

Database Description Help
GOA controlled vocabulary to describe gene and gene product attributes [Help]
PlantGO describe plant structures,growth and developmental stages [Help]
GOSlim controlled vocabulary to describe gene and gene product attributes [Help]

 

Protein Domain

Database Description Help
SMART Swiss-Prot, SP-TrEMBL and stable Ensembl proteomes [Help]
COG Clusters of Orthologous Groups of proteins [Help]
Pfam sequence alignments covering many protein domains and families [Help]