Links :: Plant Model Organisms

Plant Model Organisms :: General Resources

1. Canada's Forest Network
   The Canadian Wood Council CWC is the national association representing Canadian manufacturers of wood products used in construction. CWC works with building codes and standards and by developing and communicating technical information to architects, engineers and builders
2. PlantGDB || View Abstracts
   Resources for Plant Comparative Genomics such as sequence download, annotation, and comparison tools
3. TreeBase || View Abstracts
   A relational database designed to manage and explore information on phylogenetic relationships
4. USDA Plants Species Database
   The PLANTS Database provides standardized information about the vascular plants, mosses, liverworts, hornworts, and lichens of the U.S. and its territories.
5. Gymnosperm Database
   Basic information about gymnosperms for the public. Taxonomic tree
6. Native Conifers of North America
   Pretty pictures of trees and how to identify
7. American Conifer Society Database
   Community dedicated to conifers with web links, photos and forums.
8. Plants for a Future Database (Pinaceae)
   Database of plants with information about habitat and uses (website sometimes goes down at end of month)
9. BoDD - Botanical Dermatology Database
   Summary of plants in Pine family and where they are found
10. ITIS - Integrated Taxonomic Information System
    Government website with authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world.
11. MIPSPlantsDB - MIPS Plants Databases || View Abstracts
    The MIPS plant genomics group focuses on the bioinformatics of plant genomes.
12. Plant Transcription Factor Database || View Abstracts
    PlnTFDB is a public database arising from efforts to identify and catalogue all Plant genes involved in transcriptional control.
13. ChromDB || View Abstracts
    Displays chromatin-associated proteins, including RNAi-associated proteins, for a broad range of organisms. Our primary focus is to display sets of highly curated plant genes predicted to encode proteins associated with chromatin remodeling.
14. TIGR Plant Genomics Group
    TIGR's Genome Projects are a collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans.
15. Plant MPSS Databases || View Abstracts
    Good starting point when working with plants with sequence downloads

Plant Model Organisms :: Fruits

1. GDR (Genome Database for Rosaceae) || View Abstracts

Plant Model Organisms :: Arapidopsis

1. GABI (Genome Analysis of the Plant Biological System)
2. Gramene || View Abstracts
   A resource for comparative grass genomics
3. The Arabidopsis Information Resource || View Abstracts
   a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana
4. The TIGR Arabidopsis thaliana Database
   Provides a collection of information on genome research, including chromosomes, RNA gene table, gene survey charts, and sequence data.
5. The MIPS Arabidopsis thaliana genome database || View Abstracts
6. ATIDB : The Arabidopsis thaliana Integrated Database
   Database Integrates Arabidopsis Genome, Gene Ontology db, Transposon and T-DNA flanking sequence, and more
7. AtGDB: An Arabidopsis thaliana Plant Genome Database
8. Database of Arabidopsis Transcription Factors - DATF || View Abstracts
   not-updated
9. Arabidopsis MPSS Plus Database Test
10. The Arabidopsis Lipid Gene Database
    not-updated
11. Arabidopsis Small RNA Project - ASRP || View Abstracts
12. Arabidopsis Transcriptome Genomic Express Database
13. Complete Arabidopsis Transcriptome Microarray - CATMA || View Abstracts
14. Arabidopsis Unannotated Secreted Peptide Database || View Abstracts
15. The Goldberg Lab Arabidopsis thaliana GeneChip Database
16. The Arabidopsis Gene Regulatory Information Server - AGRIS || View Abstracts
17. Arabidopsis Splicing Related Genes (ASRG) || View Abstracts
18. RARGE - RIKEN Arabidopsis Genome Encyclopedia || View Abstracts
    RIKEN is japanese institute institute RARGE is their genome encyclopedia
19. Arabidopsis Mutations Library Database
20. AFGN - Arabidopsis Functional Genomics Network
21. Arabidopsis thaliana Transcription factors || View Abstracts
22. Arabidopsis thaliana Chromatin Database || View Abstracts

Plant Model Organisms :: Trees

1. Arborea
   This genomic project will identify and characterize the function of genes that control major properties of economic importance in forest trees, namely genes that control wood formation and forest health. Has poplar and spruce ESTs.
2. BIOGECO - UMR
3. MycorWeb - INRA
   Tree micro-organism interactions
4. IPGC - International Populus Genome Consortium
5. PopulusDB || View Abstracts
6. Douglas-fir Genome Project
7. Populus trichocarpa Transcription factors
8. Populus trichocarpa genome - JGI
9. Populus trichocarpa Chromatin Database
10. AspenDB
11. PoplarPLEX
    MIAME/Plant-compliant and Plant Ontology enhanced expression database for poplar microarray data
12. Genome Sciences Centre
    Physical Mapping Data Access

Plant Model Organisms :: Conifer

1. Conifer Comparative Genomics Project - UCDavis
2. Douglas-fir Genome Project - UCDavis
3. BIOGECO - UMR
4. Laboratory for Genomics and Bioinformatics - University of Georgia
   MAGIC Database, The database can be thought of as consisting of two major components - a segment that focuses on gene discovery through DNA sequencing, with a focus on EST projects, and a second that deals with microarray data.
5. Genomics of Wood Formation in Loblolly Pine - CCGB
   link dead as of 7/2009
6. Loblolly and Slash Pine Rooted Cutting Program - North Carolina State University
7. Accelerating Pine Genomics - MGEL - Mississippi State University
8. Genomics of Loblolly Pine Embryogenesis Project - IPST and TIGR

Plant Model Organisms :: Grains

1. GABI (Genome Analysis of the Plant Biological System)
2. GrainGenes || View Abstracts
   GrainGenes is a suite of services for the Triticeae and Oat communities, including databases, documents, tools, data files, web sites, announcements, curation, and community assistance.
3. Gramene || View Abstracts
   A resource for comparative grass genomics
4. BarleyDB
5. The maize genome database (MGSP)
6. MaizeGDB || View Abstracts
   MaizeGDB is the community database for biological information about the crop plant Zea mays ssp. mays.
7. MaizeSequence
8. Functional Genomics of Maize Chromatin Consortium
9. PGIR - Plant Genome Initiative at Rutgers
10. HMPR and MSLL for maize
11. Maize Full Length cDNA Project
12. Maize Mapping Project
13. Maize Sequencing
14. Consortium for Maize Genomics
15. Maize Gene Discovery
16. Molecular and Functional Diversity of the Maize Genome
17. Maize Genetic Mapping Project
18. Maize Genetics Cooperation Stock Center
19. Maize Oligonucleotide Array Project
20. The TIGR Maize Database || View Abstracts
21. The MIPS Oryza sativa database (MOsDB) || View Abstracts
22. Oryza sativa subsp. japonica Transcription factors
23. Oryza sativa spp. JaponicaChromatin Database
24. MGOS - Magnaporthe Grisea Oryza Sativa Interaction Database || View Abstracts
25. Oryza Map Alignment Project (OMAP)
26. Sequencing Information (ACWW/IRGSP)
27. Rice Genome Sequencing
28. NSF Rice Oligonucleotide Array Project
29. Oryzabase || View Abstracts
30. Rice Database
    The Rice Annotation Project (RAP), Integrated Rice Genome Explorer (INE), Rice GAAS Rice Genome Automated Annotation System, Rice Annotation Database (RAD), Rice Proteome Database, Knowledge-Oriented Molecular Biological Encyclopedia KOME, Rice Tos17 Insertion Mutant Database, Rice Expresstion Database RED, RGP Rice cDNA Sequence Database, RMOS Rice Microarray Opening Site, Rice PIPELINE, PLACE (PLAnt Cis-acting Regulatory DNA Elements Database), Rice Mitochondrial Genome Information RMG, RPSD Rice Protein Structure Database
31. TIGR Rice Genome Annotation Database and Resource || View Abstracts
32. Rice Kinase Database
33. Rice MPSS
34. RiceGE: Rice Functional Genomic Express Database
35. The Korea Rice Genome Database
36. International Rice Genome Sequencing Project (IRGSP) || View Abstracts

Plant Model Organisms :: Grasses

1. FoggDB
   FoggDB for the storage of genetic mapping data pertaining to the temperate forage grasses, Lolium Perenne, Lolium multiflorum and Festuca Pratensis
2. Gramene || View Abstracts
   A resource for comparative grass genomics

Plant Model Organisms :: Legume

1. The Medicago truncatula genome database
2. TIGR Medicago truncatula Genome Project
3. UMN Medicago resources || View Abstracts